Pierre Bonnier (16 August 1861 in Templeuve – 22 March 1918 in Paris) was a French otologist.
He was the brother of architect Louis Bonnier (1856–1946).
He studied medicine in Paris, and in 1897 began work as an assistant in the medical clinic of the Hôtel-Dieu in Paris.
The eponymous "Bonnier syndrome" is a syndrome characterized by deafness, ocular disturbances and other symptoms due to a lesion of the nucleus of Deiters.