Johanna Nilsson (27 March 1983 – 25 June 2013) was a Swedish middle- and long-distance runner.
She was a bronze medallist at the European Cross Country Championships in 2005.
Despite an early retirement in 2006 she had a highly successful collegiate career in the United States, winning three NCAA indoor titles and winning the NCAA Women's Division I Cross Country Championship in 2005.
Her sister, Ida Nilsson, was also an international distance runner.